rs223152118 SNP Detail

Summary

• ID
  rs223152118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGGTAGC CCGACTAGGG
  GCGCTCACCC AGCCGTCCGC CGGGCCGAGG AGAGGCACCG CCAGGCGAGC GAGCGCCCGT
  TTCCTCGAGA GTCAGACGAG GCGAGGGCGG CGGTGCAAAC GCGGCGCGGG CTCGCGGCTC
  CCGGTGGCGA GAGCGCAAAT CTCCACCCCC GACATTTCCC CGGAAGCGCG GCGGCTGCGG
  Y
  GCGCGCGGCG ATGTGAGGGA GACAGCGGCG GCTCCCGCCT CAGGAAGGGC ATGTTCGGAG
  GGGCGTCCGC GGCGCGCCTC TCGCCCCAGC GCCCCCTCCC CACGGCCGCC GCGCCCGCAG
  CGCAATAAAA GGGGCGGCCG CGCTTCCTGA CGCGAGACCC GCGCTTGCCG CCGCCGCCCA
  CCCGCCTGCC CGCCCGCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss372063451	MGP_WTSI_7_88358489	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223152118					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063451	MGP_WTSI_7_88358489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863351 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	430 bp upstream
Cpgi19350	CpG island 19350	within coordinates
Gm73624	predicted gene, 73624	222 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	319 bp downstream
Tssr67495	transcription start site region 67495	281 bp downstream
Tssr67496	transcription start site region 67496	261 bp downstream
Tssr67497	transcription start site region 67497	244 bp downstream
Tssr67498	transcription start site region 67498	107 bp downstream
Tssr67499	transcription start site region 67499	within coordinates
Tssr67500	transcription start site region 67500	148 bp upstream
Tssr67501	transcription start site region 67501	174 bp upstream
Tssr67502	transcription start site region 67502	442 bp upstream
Tssr73321	transcription start site region 73321	443 bp upstream
Tssr73322	transcription start site region 73322	390 bp upstream
Tssr73323	transcription start site region 73323	48 bp downstream
Tssr73324	transcription start site region 73324	72 bp downstream