rs223152949 SNP Detail

Summary

• ID
  rs223152949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89942018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATCAGC CTGAAACTGT
  TTCAAAAAGA AAAGAAAGTT AACACCTTTT CCTTCTGCAC CCTCCTTCAC CTCCCAAATC
  CATACTGCCT CTCACCTGAA TTTCATTAAA GGCATCCACC TTACTAAAAG ATTGTTCCAA
  ACAGGAAGAT CTCAGTCTCT CAGCTCTGTT GTCTTCTCTT CCCCCAGTGT GTATAGTCCC
  K
  CAGAGATGGA AACATTCCTT CTAGCAGGGA ATATCCTTAA GTAGAAAGGA ACACAACCCA
  AAATAGCTTC AGGAAGTCCC TAAAACTGAG CAGATTTGCT AGGTCCCTCC CTGCCATACT
  AAGCAGTAAG AGCTGAGTCT CAAATGAGCC AAGATGCAGA CTTAGATGAG ACCAGACCAG
  CCTCCTAGAA GAGGCAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397287441	MGP_WTSI_16_90145375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223152949					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397287441	MGP_WTSI_16_90145375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89942018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8419	CpG island 8419	349 bp distal
Gm10789	predicted gene 10789	within coordinates
Gm56608	predicted gene, 56608	within coordinates
Rr404948	regulatory region 404948	1072 bp downstream
Rr519038	regulatory region 519038	1372 bp distal
Rr519040	regulatory region 519040	1163 bp distal
Rr519041	regulatory region 519041	within coordinates
Tiam1	T cell lymphoma invasion and metastasis 1	1361 bp upstream
Tssr139275	transcription start site region 139275	1134 bp downstream
Tssr142016	transcription start site region 142016	1355 bp upstream
Tssr142017	transcription start site region 142017	1336 bp upstream
Tssr142018	transcription start site region 142018	1307 bp upstream
Tssr142019	transcription start site region 142019	1273 bp upstream