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rs223156318 SNP Detail
Summary
  • ID
    rs223156318
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101168887 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGAACCGTGA CACTTCCGGC
ATTCTGGACG CACCCGTGAC CTCCACCAAG TCCCGGAGCG GGGCTTCAGG TGGCAGCGAG
GGCCGCTGTG CAGTCTGTGG TGACAATGCT TCGTGTCAGC ACTATGGGGT CCGCACCTGT
GAGGGCTGCA AGGGCTTCTT CAAGGTATTT TGTTGGTTCT GGGGGACGAT GATATCATGT
W
GGAGGTGGGG GTGGAGTGGG TCATCCGTTG GGATCTGTAG TGACCTCTCC TGAGGTTTCT
TCCCAGCTGG TTCTGTCCTG CAGGACAGGG GACAGGTGTG TGCCATCTTA GAGGCTGGGA
CTTTTTATTC AGCAGGGCAC ACATCTCTCT AGGGCTGCAG AAAGCTGGGG AAGGGGGCAG
AAGGTGTGTG TGTGTGTGGC                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395192999 MGP_WTSI_15_101101437 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223156318 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395192999 MGP_WTSI_15_101101437 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101168887 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Tssr133222 transcription start site region 133222 1590 bp downstream
Tssr133223 transcription start site region 133223 900 bp downstream
Tssr133224 transcription start site region 133224 882 bp downstream
Tssr133225 transcription start site region 133225 866 bp downstream
Tssr133226 transcription start site region 133226 848 bp downstream
Tssr133227 transcription start site region 133227 835 bp downstream
Tssr133228 transcription start site region 133228 819 bp downstream
Tssr133229 transcription start site region 133229 781 bp downstream
Tssr133230 transcription start site region 133230 722 bp downstream
Tssr133231 transcription start site region 133231 696 bp downstream
Tssr133232 transcription start site region 133232 669 bp downstream
Tssr133233 transcription start site region 133233 648 bp downstream
Tssr133234 transcription start site region 133234 622 bp downstream
Tssr133235 transcription start site region 133235 580 bp downstream
Tssr133236 transcription start site region 133236 541 bp downstream
Tssr133237 transcription start site region 133237 510 bp downstream
Tssr133238 transcription start site region 133238 492 bp downstream
Tssr133239 transcription start site region 133239 429 bp downstream
Tssr133240 transcription start site region 133240 361 bp downstream
Tssr133241 transcription start site region 133241 352 bp downstream
Tssr133242 transcription start site region 133242 340 bp downstream
Tssr133243 transcription start site region 133243 319 bp downstream
Tssr133244 transcription start site region 133244 289 bp downstream
Tssr133245 transcription start site region 133245 243 bp downstream
Tssr133246 transcription start site region 133246 213 bp downstream
Tssr133247 transcription start site region 133247 132 bp downstream
Tssr133248 transcription start site region 133248 114 bp downstream
Tssr133249 transcription start site region 133249 728 bp upstream
Tssr133250 transcription start site region 133250 762 bp upstream
Tssr133251 transcription start site region 133251 793 bp upstream
Tssr133252 transcription start site region 133252 1140 bp upstream
Tssr133253 transcription start site region 133253 1151 bp upstream
Tssr133254 transcription start site region 133254 1171 bp upstream
Tssr133255 transcription start site region 133255 1204 bp upstream
Tssr133256 transcription start site region 133256 1245 bp upstream
Tssr133257 transcription start site region 133257 1263 bp upstream
Tssr133258 transcription start site region 133258 1715 bp upstream
Tssr133259 transcription start site region 133259 1732 bp upstream
Tssr133260 transcription start site region 133260 1750 bp upstream
Tssr133261 transcription start site region 133261 1760 bp upstream
Tssr133262 transcription start site region 133262 1771 bp upstream
Tssr133263 transcription start site region 133263 1792 bp upstream
Tssr133264 transcription start site region 133264 1811 bp upstream
Tssr136545 transcription start site region 136545 696 bp upstream
Tssr136546 transcription start site region 136546 575 bp upstream
Tssr136547 transcription start site region 136547 500 bp upstream
Tssr136548 transcription start site region 136548 483 bp upstream
Tssr136549 transcription start site region 136549 458 bp upstream
Tssr136550 transcription start site region 136550 342 bp upstream
Tssr136551 transcription start site region 136551 237 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory