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rs223159179 SNP Detail
Summary
  • ID
    rs223159179
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr9:21500226 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCACAGACCC TCTGAGAAAC
    CCGGCTGGCC GGGCCAAGCC AGCAGCCCCT GTTCCTAGGC CCAGAGGTTC TAGGTGAGGG
    GTGGCCCTGT CAAGCCTTCA GAGTGGGCAC AGCCCCCTCC CACCAAAGGG TTCACCTCAA
    ACTTGAATGT ACAAACCACC CAGCTGTCCA AAGGCCTAGT CCCTACTTTC TGCTACTGTC
    M
    TGTCCTGAGC CCTGAAGGCC CCCCTCCATC AAAAGCTTGA ACAGGCAGCC CAGAGTGTGT
    CACCCTGGGC TACTGGGGCA GACAAGAAAC CTCAAAGATC TGTCACACAC ACACAAGGAA
    GGCGTCCTCT CCTGATAGCT AACATAGGCC TGTGTGTTGC GTTCACATTC ATGTTCTACT
    TAATCCTCTC AAGACAGCAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss376869849 MGP_WTSI_9_21393374 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223159179 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss376869849 MGP_WTSI_9_21393374 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:21500226 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Carm1 coactivator-associated arginine methyltransferase 1 within coordinates
Rr674930 regulatory region 674930 1682 bp distal
Rr674931 regulatory region 674931 435 bp distal
Tssr84017 transcription start site region 84017 1603 bp downstream
Tssr84018 transcription start site region 84018 728 bp downstream
Tssr84019 transcription start site region 84019 414 bp downstream
Tssr84020 transcription start site region 84020 325 bp downstream
Tssr84021 transcription start site region 84021 20 bp downstream
Tssr84022 transcription start site region 84022 273 bp upstream
Tssr84023 transcription start site region 84023 298 bp upstream
Yipf2 Yip1 domain family, member 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory