rs223161099 SNP Detail

Summary

• ID
  rs223161099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154930636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCACAA CAAAGGAACA
  GTGAAAATCA GCTGCTCCTG TCATTTGAGC ATAAACCTGA GGTTCTGAGC CACAGATGAG
  CATTTCTGGG TAACTTCATA AGCTTGCCTC TATATTGCAA GAGGAATTAG GCACAGGGGT
  TCCAGTTTCT ACCTAGTGAC CTATAAATAA ACACTTGAAC ACAATGTGCA CGTCACTTAT
  R
  CCCAGTCCGG CTGGGCGGGG GGGGGGGTGG GGGGGTGGGG GGAGGGTCAG TTCCCTTTTT
  GAATATCACA CTGTCAGGGA TCAACTTTTC TTATAAATTA GTGGCTCCGA TGTTAACCAT
  GTTCAGTGGT GGCCAACTAT GACAGTTTGA TGTTTGTTTT ATCCTATAGG GCTTGGGGAC
  CAACTGAAAA AGAACGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352009497	MGP_WTSI_1_156902020	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223161099					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352009497	MGP_WTSI_1_156902020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154930636 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	1634 bp upstream
Gm71001	predicted gene, 71001	within coordinates
Rr372279	regulatory region 372279	219 bp upstream
Tssr247	transcription start site region 247	110 bp upstream
Tssr9520	transcription start site region 9520	82 bp upstream
Tssr14327	transcription start site region 14327	129 bp upstream
Tssr14328	transcription start site region 14328	79 bp upstream
Tssr14329	transcription start site region 14329	26 bp upstream
Tssr14330	transcription start site region 14330	289 bp downstream