rs223162157 SNP Detail

Summary

• ID
  rs223162157
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111525962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGCTGT TCAGTCATGA
  GGACCTAAGT TTGAATCCCC AGAATTCATA TAAAAGCCAG ACTCGGTGGC TCGAGTGTAT
  AACCCCAGCA CTGGAGAGTA GAGACAGATC ATGGGAGCTC ACGGGCCAGC CAATCTAGCC
  AAAGCAGTGA ACTCCAGTAC GTGAGCCTGC CTCAAAAAAA TAAGATTGCA ACACTATACC
  A
  TATTGACATA GGAAGACACT GGACATTAAT ATAATATATA GGAAGACATC AGACATCAAT
  ATATTGTATT GAATATAGGA AGACATCAGA TATCAATATG CCATACCGAA TATAGGAAGA
  CACGAAACAT CAATTTCTGT CCTCCACATG CGCATGCACG GGTAAATACA CCCACACTCA
  CACAGTTACA GGTCCCTAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J
ss387360625	MGP_WTSI_12_112797739	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J
rs223162157					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360625	MGP_WTSI_12_112797739	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111525962 () rs orientation: forward

Symbol	Name	Function Class
Gm48248	predicted gene, 48248	518 bp upstream
Rr265087	regulatory region 265087	within coordinates
Rr266355	regulatory region 266355	1840 bp proximal