rs223164449 SNP Detail

Summary

• ID
  rs223164449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTTTTT TTCCTGTTCT
  GAGTGCCATT GAATTCTGCT CTTACCATTA TGTTTTTCTC CTGTCTGCTG GGTTTTGCAC
  TTTGTAGACA GCCCTAGACC TTCAGAGGCC TTCTCTGAGA TTTGCTACTC CATGGGAAGT
  TTCTCCTTGT GGAACTTTTC TTCTGGCATA GCTTCTGAGC AGCCTCCCTG CATCTCACAT
  Y
  CCTCCCCACC CCCCACCCCA CCCCCCTTTG TTCTTTTTGA CACTAGGGAC AGTCCAGGGC
  CCTGTACATG CTAGGTGGGC ACTCTATCCT GAGCTGCAGC TGGGCTTCTG GAAGTTCATT
  GCTCCAAGTA ACACCTTCAC GTGCTGTGCT CTGACCTTGC TGGGCCTTTC TGGACCATCA
  TTTATTAACT TTTTTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658626	CHEV_18_66082228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223164449					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055645 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	206 bp downstream
Gm50119	predicted gene, 50119	1482 bp downstream
Gm58551	predicted gene, 58551	891 bp upstream
Rr346799	regulatory region 346799	45 bp distal
Rr346800	regulatory region 346800	1756 bp proximal
Rr353052	regulatory region 353052	244 bp distal
Rr393825	regulatory region 393825	1639 bp upstream