rs223169383 SNP Detail

Summary

• ID
  rs223169383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCAGAGC AGACAAAGGA
  CAGACCAAGG CTGTGATGGG AATCCAACTG TGGCCCTCAA CCAGGGTGGG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTTTCTAA CCCCAGAACT TAAAAATATC
  TGGAGATATC TTTGCAGAAC TTTAGGGGAC CAGGACCAGC AGTGCTACTG AAAATCTTCT
  R
  AGATTCATTT CGATAAGGCT GAGGATGAGA GTCCCTGGTG TTCAGCAAGA GAGTCCCTGA
  GAGAGTAAGG AGGGCTAAAA TTCCAACCTT TCTCCCAGAG GACACTTGCC TACCCTGATG
  GTGTGCCCTT TAGTCATTTA GCTGGGGGAG GCATGGTTCT GCACTGAGAA GAAAGCATAC
  CAGATCTCAT TCCACAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378625855	MGP_WTSI_9_98324016	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223169383					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378625855	MGP_WTSI_9_98324016	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1067 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	3 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	1235 bp distal
Rr685256	regulatory region 685256	626 bp distal
Rr685257	regulatory region 685257	468 bp distal
Tssr2984	transcription start site region 2984	1486 bp upstream
Tssr86646	transcription start site region 86646	1182 bp upstream
Tssr86647	transcription start site region 86647	1265 bp upstream
Tssr86648	transcription start site region 86648	1325 bp upstream
Tssr86649	transcription start site region 86649	1362 bp upstream
Tssr86650	transcription start site region 86650	1709 bp upstream
Tssr86651	transcription start site region 86651	1891 bp upstream