rs223171467 SNP Detail

Summary

• ID
  rs223171467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139533989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTCTAA TGCTTTCCTC
  TTCTCCATCT AGCCCCATTC CACTAGTGTG TGTGCACATG TGTGTATGTA CATGTGGATG
  TGTGTGCATG CATGTGTGTG TGGGTGTGGG TGGTGTGTAT GATTACATAT GCCAGCATTC
  ATGCATGTAT GCAATTGTCC ATGTGTATGT GCACCATGTG TGCATGGTGT GTGTGTGTTG
  K
  TGTTGTTGTT GTTGTTGTGT GACCACTTGC ATGTCTGGAA ATGTGTGTAA GATACAGAGA
  GACAGAAACA AAGAGATGGA GAGACAGAGG AAGCTAGTGT CAAATTTTGT TCACAATAGT
  TGGTACACTT TTAGGTACTG AATTGATTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGAGAGAGA GAGAGAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss370296800	MGP_WTSI_6_139505512	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs223171467					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370296800	MGP_WTSI_6_139505512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139533989 () rs orientation: forward

Symbol	Name	Function Class
4930404I20Rik	RIKEN cDNA 4930404I20 gene	within coordinates
Gm67453	predicted gene, 67453	725 bp upstream