rs223175949 SNP Detail

Summary

• ID
  rs223175949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72346774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAATT CCGCAAATCA
  TTGAACATAC AAGTCATGAA TAAGTTAGAG AGGCAAGCCA AGAACCAAGT GGTGCAAAAT
  GAAAACGACG AGAAGGTGGA ACGCCAGAGG TTCCTCAGAG TGCTGCAGAA TGAGCAGTTT
  GAGCTCGACA TGGAAGAAGC CATCCAAAAA GTAAGTTGCA ATGTCCTTGT TAGTTTTCTT
  Y
  CCTTGGAAAA GGTGAAAGAT GGCTGTCAGC CCTGCCTGGA GTTGAGGAAA TACAGAGAGC
  TGGGAACTGA CTGAATCCTT TGGAGTCCTG GTTATTTTAG CTGAAGAACG TGGTGTCAGT
  TGGTCAGTTT GCATGCTTTT AACAACGAGC AAATCGAAAG ACTTTAGAAT AGCATTTGGC
  AAGAATATCC ATTTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378018643	MGP_WTSI_9_72287299	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223175949					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378018643	MGP_WTSI_9_72287299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72346774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	770 bp distal
Gm27231	predicted gene 27231	1587 bp downstream
Gm36948	predicted gene, 36948	1268 bp upstream
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	813 bp downstream
Rr682742	regulatory region 682742	947 bp distal
Rr682743	regulatory region 682743	455 bp distal
Rr682744	regulatory region 682744	709 bp proximal
Rr682745	regulatory region 682745	1339 bp proximal
Rr682746	regulatory region 682746	1414 bp proximal
Tssr85997	transcription start site region 85997	1476 bp downstream
Tssr85998	transcription start site region 85998	959 bp downstream
Tssr85999	transcription start site region 85999	914 bp downstream
Tssr86000	transcription start site region 86000	894 bp downstream
Tssr86001	transcription start site region 86001	876 bp downstream
Tssr86002	transcription start site region 86002	646 bp downstream