rs223183969 SNP Detail

Summary

• ID
  rs223183969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:69816386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCCAGCT CGTGAAGCAC
  CGTGTGGTCG CAGTACTCGA ACACCAGGTG AAGCCTCCGC TTCCTCCGGA AGACTTCCAG
  GAGGTTGACC AGGTTGGGGT GCTTGAGTTG CTGAAATCAG AAGAGGCAGG GTGGTGAATA
  TGGGCTGTGA GAGTCTTTCT CTGGGTTCCA GCCAGTAGAA ATAAAGGTGT CCCCCCTTCA
  Y
  GAGGTTCACT CTCTGTGTGG AAGGAGTCTG AAATCATCGC CACCTGAGCT CTCTTCACAG
  GCTGTCTGTC AGCGACTTAG AGACCAGGGC CTGGGTACTT TGTGACAGCA GAGTTCTGAG
  AAGACTGGCT AGGGTGAGGA AATGCTGACG GGGTTGAGTT AGACGAGCTC AGCCTTCAAG
  GCTCTAGTTA AGTATCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085534	CHEV_12_70870599	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223183969					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69816386 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	Intron
Rr467133	regulatory region 467133	1821 bp distal
Tssr116525	transcription start site region 116525	305 bp upstream
Tssr116526	transcription start site region 116526	121 bp downstream