rs223184557 SNP Detail

Summary

• ID
  rs223184557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152181310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGGCGCA ACTGCACAAT GGCAGGAAGC
  GGGGCTCAGT GCTTTGTCCC TAGCGCGGCG CAGACCGTAG CTTCCTCCGG CCACCATGGG
  GACAGGACCG GGCGTCTCCG GGCGCCGAGC AGCAGCCAGG CCCAGCTCTG AGCTACCCTC
  Y
  CCAGACTCCC AGCTCCTCTG GGTCGGGGGT CATGCCCACA GCAGCGACAG CCAGGTAGCG
  GGACGTGGGT GGGCTAAAGC CTAACGGGTG GTGTGCATGA CTTAACTTGA TCCTCTCTGT
  CCCCCTCCCC AGGGTGGCTG AGCCCCTATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321433895	CHEV_4_151470962	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223184557					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152181310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15387	CpG island 15387	within coordinates
Plekhg5	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	within coordinates
Rr377434	regulatory region 377434	within coordinates
Rr605737	regulatory region 605737	674 bp distal
Rr605738	regulatory region 605738	124 bp distal
Rr605739	regulatory region 605739	535 bp distal
Rr605740	regulatory region 605740	816 bp proximal
Rr605741	regulatory region 605741	1323 bp proximal
Tssr40496	transcription start site region 40496	137 bp downstream
Tssr40497	transcription start site region 40497	71 bp downstream