rs223187929 SNP Detail

Summary

• ID
  rs223187929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77159324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTATAT GTATTTGTGG
  GGTTTGTGTA AAGTCCATTA AAACAACGGT CATAGGAGTA ACTCTTCTCA CCTGACATCA
  CATATAAATA TTACTGTGGG TTTTTCTGTT ATTTTGTGTT CCTAGGTGGA AAGCCCCCTT
  ATCTATAAAT AGGAATTTTA GGTGCCTTCT GTCCTTTTGT TTTGGTTTTT GGTTTTTTTT
  K
  GTTTTTTTGT TTTTTTGCTA TAACATAAGA TTTTTCAGTT CATTGTTTAA TGGCACAGTG
  GTAGCTTACA GATGAACACG AAATGACTAA ACAATATTTG GGTTTTCCAG GTTTTATTTA
  GAATGAATGA CTTTCAAGAT TGTCATTTAA GTATGACATT GACTATTTAA TGTATTTTTA
  AATCACTAGA ATGTTATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss396933539	MGP_WTSI_16_77362681	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs223187929					SNP	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396933539	MGP_WTSI_16_77362681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77159324 () rs orientation: forward

Symbol	Name	Function Class
D16Mit217	DNA Segment, Chr 16 Massachusetts Institute of Technology 217	1010 bp distal
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	910 bp downstream
Tssr139061	transcription start site region 139061	5 bp upstream