rs223190679 SNP Detail

Summary

• ID
  rs223190679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:82069766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA CGCACACACA
  Y
  ATGAGTTCCA ACTCCCAGGT GACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322727469	CHEV_8_83867036	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223190679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82069766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	104 bp distal
Gm51582	predicted gene, 51582	474 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	within coordinates
Rr666047	regulatory region 666047	1453 bp distal
Rr666048	regulatory region 666048	565 bp distal
Rr666049	regulatory region 666049	within coordinates
Tssr78167	transcription start site region 78167	627 bp downstream
Tssr78168	transcription start site region 78168	592 bp downstream
Tssr78169	transcription start site region 78169	562 bp downstream
Tssr78170	transcription start site region 78170	520 bp downstream
Tssr78171	transcription start site region 78171	419 bp downstream