rs223190891 SNP Detail

Summary

• ID
  rs223190891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120769981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGCCCTG TAGCTCCTGT
  CCTTTCTGCT CCAGCTCTCT CCAGCGCTGG TTCACGGACT CTATCGTGCT GCGGTATTCC
  TTGGAGTGGG ATGCAGTTAG AGGTGTGTGT CTGTTCACCT AATACTCCTA GCTGCAGTTG
  CTCTCTTGCT TACACACAAC CCCTTCCTGT GCCCCCCCCC GCCCGAATGC TAGTGGACCC
  R
  TTTATTCCCC GCCCCCCTCA ACCTTTTTCC CTCTAGATAC TCCATGTTCC AGCTACCTGA
  CTCCCTGAGC TTTTAAAAAT AAATATTTTT ATGTTTTAAA TTGTGTGTAT TTCTGGGAGG
  GATGTGTGCA TGTGAGTGTA GTACCCTTAG AGGCCAGAAG AGGGCACTGC CCCCTCTGAG
  CTGGAGTTGC AGTGTGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366479339	MGP_WTSI_5_121081925	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223190891					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366479339	MGP_WTSI_5_121081925	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120769981 () rs orientation: forward

Symbol	Name	Function Class
Cfap73	cilia and flagella associated protein 73	within coordinates
Cpgi16507	CpG island 16507	1790 bp distal
Cpgi16508	CpG island 16508	155 bp distal
Gm72343	predicted gene, 72343	within coordinates
Rr619387	regulatory region 619387	470 bp distal
Rr619388	regulatory region 619388	150 bp proximal
Tssr48527	transcription start site region 48527	1860 bp downstream
Tssr48528	transcription start site region 48528	1839 bp downstream
Tssr48529	transcription start site region 48529	1827 bp downstream
Tssr48530	transcription start site region 48530	1815 bp downstream
Tssr52948	transcription start site region 52948	1928 bp upstream
Tssr52949	transcription start site region 52949	1897 bp upstream