rs223194950 SNP Detail

Summary

• ID
  rs223194950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCTCGC TTTGCCTTCC
  GAGCCCGCTC CACCCTTCCG GACGCCACCT TCCCCCCCAC CCGCCTGCAG GACGACAGCT
  CGGAGGGGCG GCCGCCGCCC TGGTAGGAGG CGGGACGAGG CAAGGGCGGG CTGCGGGAGG
  CGGGACGGAA GGAGGGGCGG GGCCAAGCGC CTTGGCGCCG CGTTGTCATG GCAGCGGGGC
  S
  GGGAGGAGGG GAGGAAGCGA GCAGGCGGGA GGGGTGGGGG GGGGGGGGAT GTGGTGCTGC
  GGCGGCCGCC ACCGCAGCTG CCACTGCCTG CTCGCGCCTG GGTGTCCCGG AGGCGGCTGC
  TGGGAGCCAC GGGAGCAGCT GCGGTGCTCT GCCATATTGT GTCTGGCCCG GCCCGGCCCT
  CGCCTCTGGT TCGCGGCGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399389866	MGP_WTSI_17_88840015	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223194950					SNP	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399389866	MGP_WTSI_17_88840015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	36 bp upstream
Rr405533	regulatory region 405533	11 bp downstream
Tssr146228	transcription start site region 146228	39 bp upstream
Tssr146229	transcription start site region 146229	67 bp upstream
Tssr146230	transcription start site region 146230	396 bp upstream
Tssr146231	transcription start site region 146231	849 bp upstream
Tssr149806	transcription start site region 149806	1145 bp downstream