rs223197730 SNP Detail

Summary

• ID
  rs223197730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121069023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTCTTG GTCAAAACAG
  AAGTAATTGA GACTCCCAGA ACAGCTGTAA AGATCAGGTG GGGTAGAGAG AATCCCTTTA
  GCTCAGACAA TAAACCCTGC AGCTCAGCAC ACGGCCTCGG GTCCTGCTAC CCCATTCCCC
  GGCTCTCAGA AGGAAACGTC TCCAAGCTGG TCTTACTCAC AGGCTTCACT CCACTGCATA
  Y
  GCAAAACTTG CTAAGAGACT AAGTGTTCTT GTGAAGAAGG AAAAAAAAGG AGGTATGTGA
  GGTGACAAAT ATGCTAACTA ACTTGGAATC ATCATCTCAC AACTTGCAGT TTGTCCTGTA
  CATTGTAAGA AAGCTTGGGG GAAATACGCT AGATTAAAAG GGGCATTCAT AGTACTGATA
  TTTGACAAAG CCACTTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324851446	CHEV_14_121230833	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223197730					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121069023 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	311 bp proximal
Rr287003	regulatory region 287003	within coordinates
Rr390218	regulatory region 390218	451 bp upstream
Rr404289	regulatory region 404289	189 bp upstream