rs223199967 SNP Detail

Summary

• ID
  rs223199967
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148989267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCGAGT CAGCCATGTT
  CCAGCGAGCG CAGCGGCGCC GCTCCCCCCC ACACGGCCGC CCCGCTCGCC CGCCGCCTCA
  CCCGGCCCGA GCCGCCCCGC ACGGCCGCCC CCGGCCCACC CGCGGCCGCC CTCGCCCGCA
  GCGGCGCCCC GCCCGCCGCC CCGCGCTCCC CGCCGCGGCC GCCCATACAG CGGGGAAGCG
  M
  CGCTGCCCGC CGGCTCGCTC GCTCCGCGCA CGCCGCCTGC CCGAAACGCT CGGCCCTGGG
  GGCCACAAAC ACGTTTTGGG GAAAAAAAAT TTTTTTTAAA TAATCCGGAA CACGAACACA
  CACACAGGCA GACACAAAAC AAAAAAAAAA TTTTTTTTTT TTTGCGCCAG TGAAGCGCGG
  ACGGCGCCGC GGGTGTGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367145521	MGP_WTSI_5_149864033	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223199967					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145521	MGP_WTSI_5_149864033	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148989267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	1402 bp proximal
Hmgb1	high mobility group box 1	within coordinates
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	441 bp downstream
Rr399531	regulatory region 399531	553 bp upstream
Tssr1757	transcription start site region 1757	757 bp upstream
Tssr49872	transcription start site region 49872	738 bp upstream
Tssr54613	transcription start site region 54613	1852 bp upstream
Tssr54614	transcription start site region 54614	1144 bp upstream
Tssr54615	transcription start site region 54615	1067 bp upstream
Tssr54616	transcription start site region 54616	1002 bp upstream
Tssr54617	transcription start site region 54617	833 bp upstream
Tssr54618	transcription start site region 54618	749 bp upstream
Tssr54619	transcription start site region 54619	478 bp upstream
Tssr54620	transcription start site region 54620	581 bp downstream
Tssr54621	transcription start site region 54621	603 bp downstream