rs223201858 SNP Detail

Summary

• ID
  rs223201858
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCCGAG GGTGCAGCAG
  TGGCGAGTGA GTCACAGGAG AAGGTGGCAG CGACTTAGCC CTGGCAAATG GGGCAAGCTC
  GTTGTCTGAG GAAGATGATG AGCTAGAGGC GCCACTGGCT TCCCCTCGTA GGTGCCGGGC
  CACTCCTAGA GATGGACTGT CTGGGGGACC CTGAAGCAGC TCAGGGATGG AGCGCATCAC
  S
  AGGATAGACT TGTAGCTCAT CAAGGAACGC TGGAAATGAG GACAGAGGGA CATCCATTGG
  GCATGACTGG TCATGGCAGG AGGTGCGGTG CCCATTGCCT CTTTGCTCCA GAGGGGTTGG
  TTACCCAGGA CACCTGGGGC TTCTGTGCCT GCTGCTTTAT TGCTCTGCCC CACCACCTGG
  TACACTCAAG GGATCCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383534434	MGP_WTSI_11_58814651	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223201858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383534434	MGP_WTSI_11_58814651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891975 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	1761 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1271 bp proximal
Tssr101781	transcription start site region 101781	1779 bp downstream
Tssr101782	transcription start site region 101782	1771 bp upstream
Tssr101783	transcription start site region 101783	1808 bp upstream
Tssr101784	transcription start site region 101784	1825 bp upstream
Tssr108186	transcription start site region 108186	1912 bp upstream
Tssr108187	transcription start site region 108187	1868 bp upstream
Tssr108188	transcription start site region 108188	1742 bp upstream
Tssr108189	transcription start site region 108189	1033 bp downstream
Tssr108190	transcription start site region 108190	1049 bp downstream
Tssr108191	transcription start site region 108191	1206 bp downstream
Tssr108192	transcription start site region 108192	1225 bp downstream
Tssr108193	transcription start site region 108193	1242 bp downstream
Tssr108194	transcription start site region 108194	1272 bp downstream