rs223206480 SNP Detail

Summary

• ID
  rs223206480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105288892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTGGA AACTGGCCAG
  CACTCCAGAA CAAGGAGGCC TTCCCTGTGT TCTCAGAGGT TTCAGGGGTT GTCTTTGGGC
  TTGGGTGTCC TGGGATCAGC CACCACGGCT TTCCTTGAGT TTGTGTGTTT CTTCTCTTCT
  GAGGACATTA TCTCTACAGA TGCATGCATA CCAAAGCCTC GGGTGTCTTC TCATAACCCC
  Y
  CTACCTCGCC TTCAGTAACC ATTCATGCAT TCAGTCATTC AACAACTATC TAGTGAGTGT
  CTATTATGAG TGAGATACTG AGGCAATGGG ATTATAGCAG TGAGGACCAG AGGGGAGGTC
  TATGCTCTCT GGGAACTTAA CCCTGCAGAG GCAATGTTTA CCAGAACCCT TTCCTAGGCT
  CAGACTCTCA CTTGCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370115	CHEV_7_112788199	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223206480					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105288892 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	399 bp proximal
Gm45799	predicted gene 45799	867 bp upstream
Rr400513	regulatory region 400513	563 bp upstream
Rr652793	regulatory region 652793	within coordinates
Rr652794	regulatory region 652794	382 bp proximal
Rr652795	regulatory region 652795	621 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	371 bp upstream
Tssr2358	transcription start site region 2358	731 bp upstream
Tssr68382	transcription start site region 68382	778 bp upstream
Tssr68383	transcription start site region 68383	837 bp upstream
Tssr68384	transcription start site region 68384	1098 bp upstream
Tssr68385	transcription start site region 68385	1311 bp upstream
Tssr68386	transcription start site region 68386	1367 bp upstream
Tssr74083	transcription start site region 74083	632 bp downstream