rs223207281 SNP Detail

Summary

• ID
  rs223207281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAAGGG GTCTCCATCA
  AAGGGCAGAC ACGGGAGACG ACCCAGACCT GGTCTGAGTA ATGACTCAAA GGTGCTCTGT
  GGGCCCAGTT TCTTGGTTCT GGCCGTGGCA CTGTGGGCTG GGAGCATGCA CACACCTTCC
  CTCGGAACTC ACTGGGGACC TGAGCCCTGG GCTGTTTGGG ACCTGGGTCC CTGCCTCTGC
  Y
  GAGCCCAGGT GTTCCTGCAG CTCAGTTCTG CCCTGTGGCA GGGTTCTGCT CTTGGCGGAT
  TGGAAAAACT GAGAGCAAGG GAGCCTTGCT AGGCAGTCCC TGGTTTCCCC ACCCTCCACA
  TGCAAGACAG CGGCCAGTTC CTCCACACCT GGCTGTGCTT GCTGCCTCAG TGATGGCTGA
  TAAACAGCTT CACCCCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494099	CHEV_8_11839482	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223207281					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889482 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1749 bp proximal
Tex29	testis expressed 29	1006 bp upstream
Tssr76253	transcription start site region 76253	1019 bp upstream
Tssr76254	transcription start site region 76254	1032 bp upstream
Tssr76255	transcription start site region 76255	1086 bp upstream