rs223207692 SNP Detail

Summary

• ID
  rs223207692
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31146470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTCCAC CTTACTTTTT
  GAGACAGGAT CACCTATGGA GCCTGGAGCT TACGGATCCA GTTAGGCTGG ATGGCCAGTG
  AGCCCCGGGG ATCTACCTTT TTCCGGCCCT CCTCAGAGCT GGGGTTACAG TGGGCACCAC
  TATGTCTGGG TTTTATGTAG GTCTTGGGGA AGCTAAATGC AGGACCCCAT GATTGTATCG
  W
  AGGAGCTTTC TTTACAGGTG AACTATTTCT GCAACCGCCA TGATTACTTT CTAAGCTCTA
  GATTTTCTGT GTCTGTTTAG ATCTGTTTCT GGAACAAAGG GCTATTGTCA TTTGCTTTCA
  GTGTCTTTAA TTTTTTTTTC CTTGAGATGG TATCTCTTGT AGTCCAGGTT AGCCTCTTAC
  TATGTAGAAG AGGATGACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433217	MGP_WTSI_3_30991243	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223207692					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433217	MGP_WTSI_3_30991243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31146470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	1385 bp proximal
Gm65753	predicted gene, 65753	492 bp downstream
Gm65762	predicted gene, 65762	1576 bp upstream
Rr397630	regulatory region 397630	1999 bp downstream
Rr397631	regulatory region 397631	1195 bp upstream
Rr574878	regulatory region 574878	946 bp distal
Rr574879	regulatory region 574879	1086 bp proximal
Rr574880	regulatory region 574880	1956 bp proximal
Tssr28705	transcription start site region 28705	592 bp downstream
Tssr28706	transcription start site region 28706	1571 bp upstream
Tssr28707	transcription start site region 28707	1696 bp upstream