rs223215931 SNP Detail

Summary

• ID
  rs223215931
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116741836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGATTAA AACAAGTAAA
  AAGTTAGACA AATGTTACAA AATAACCTTT TTAATAGCCA GTTGCTTGTT CCAAGGACTC
  TTCCATGGAC CGATGGACTG AGTTTGTGGT CCTTTCCCCC AATGTCCTCT GTTAAGCCGC
  TTGCCGATTC ATCTAGGTTT GAAAAGAAAG AGGTTCAGCT TACTTTCCAC TACTAAAAAG
  R
  TTCCAAAGTG CACATGGTTT CATTATCAGG CATGTACTTA CTAAGGCTCT GGTGAAACAA
  GTAGGTTACA GAAGGTTCCA CCTGGCCATT ATCAGTTTTT TTAAAGGCCC AAATGGGAGT
  TTTTCCAAAG GGTACCACCA GCATGTTCGG ATATATGTGA TTCTTGGCCA AATAACCAAG
  ACCAAAAAAA AAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861292	MGP_WTSI_11_116712324	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223215931					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861292	MGP_WTSI_11_116712324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116741836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	956 bp proximal
Mettl23	methyltransferase like 23	1270 bp downstream
Mfsd11	major facilitator superfamily domain containing 11	1430 bp upstream
Rr246190	regulatory region 246190	1235 bp distal
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	1984 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	1174 bp upstream
Tssr106001	transcription start site region 106001	1475 bp upstream
Tssr111999	transcription start site region 111999	362 bp upstream
Tssr112000	transcription start site region 112000	79 bp upstream
Tssr112001	transcription start site region 112001	180 bp downstream
Tssr112002	transcription start site region 112002	248 bp downstream
Tssr112003	transcription start site region 112003	269 bp downstream
Tssr112004	transcription start site region 112004	434 bp downstream
Tssr112005	transcription start site region 112005	1103 bp downstream
Tssr112006	transcription start site region 112006	1148 bp downstream
Tssr112007	transcription start site region 112007	1192 bp downstream
Tssr112008	transcription start site region 112008	1313 bp downstream
Tssr112009	transcription start site region 112009	1418 bp downstream