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rs223215931 SNP Detail
Summary
  • ID
    rs223215931
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:116741836 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCAGATTAA AACAAGTAAA
    AAGTTAGACA AATGTTACAA AATAACCTTT TTAATAGCCA GTTGCTTGTT CCAAGGACTC
    TTCCATGGAC CGATGGACTG AGTTTGTGGT CCTTTCCCCC AATGTCCTCT GTTAAGCCGC
    TTGCCGATTC ATCTAGGTTT GAAAAGAAAG AGGTTCAGCT TACTTTCCAC TACTAAAAAG
    R
    TTCCAAAGTG CACATGGTTT CATTATCAGG CATGTACTTA CTAAGGCTCT GGTGAAACAA
    GTAGGTTACA GAAGGTTCCA CCTGGCCATT ATCAGTTTTT TTAAAGGCCC AAATGGGAGT
    TTTTCCAAAG GGTACCACCA GCATGTTCGG ATATATGTGA TTCTTGGCCA AATAACCAAG
    ACCAAAAAAA AAAAAAAAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384861292 MGP_WTSI_11_116712324 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223215931 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384861292 MGP_WTSI_11_116712324 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116741836 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 956 bp proximal
Mettl23 methyltransferase like 23 1270 bp downstream
Mfsd11 major facilitator superfamily domain containing 11 1430 bp upstream
Rr246190 regulatory region 246190 1235 bp distal
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 1984 bp upstream
Srsf2 serine and arginine-rich splicing factor 2 within coordinates
Tssr106000 transcription start site region 106000 1174 bp upstream
Tssr106001 transcription start site region 106001 1475 bp upstream
Tssr111999 transcription start site region 111999 362 bp upstream
Tssr112000 transcription start site region 112000 79 bp upstream
Tssr112001 transcription start site region 112001 180 bp downstream
Tssr112002 transcription start site region 112002 248 bp downstream
Tssr112003 transcription start site region 112003 269 bp downstream
Tssr112004 transcription start site region 112004 434 bp downstream
Tssr112005 transcription start site region 112005 1103 bp downstream
Tssr112006 transcription start site region 112006 1148 bp downstream
Tssr112007 transcription start site region 112007 1192 bp downstream
Tssr112008 transcription start site region 112008 1313 bp downstream
Tssr112009 transcription start site region 112009 1418 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory