rs223220122 SNP Detail

Summary

• ID
  rs223220122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGAGG AGGAGATGGG
  ACCGCAGTGA AGAACCAGAA TTACTGGCCT AGCCTTTGAT TCTGTGCTAC CTGGGGCAGA
  CTCAGGTGGA TCCCAGCTAC CACTTAAGAT AAGGTAAGGT CACAAGAGGT GAAGGTGTTT
  ACATTTTGGA GTCATTTGCC TAGGTTGTTA CCCATGCAGA GGCCTCTAAT AAAACCCGGT
  R
  AGTTCTTACA TTTACTTCTT CCTTTTCTTC CCTTCAAAGT CTAACAAAGG AGGCTTGGTA
  TTCCTGGCCT TCTGAGGTCT GGCCCTTGCT CTGGGAACCC AAGCTCAGTT TCTTCAGCTA
  ACCCCATAGA CGCCCTACCT TCTATGGATA CTATTCTAGG TTCACTGTTT TCGTTACTTT
  GTCCTTTTCC TATGCTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356235733	MGP_WTSI_2_156245800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223220122					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356235733	MGP_WTSI_2_156245800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	291 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	845 bp upstream
Rr55936	regulatory region 55936	within coordinates
Tssr21155	transcription start site region 21155	1356 bp downstream
Tssr21156	transcription start site region 21156	656 bp upstream
Tssr21157	transcription start site region 21157	773 bp upstream
Tssr21158	transcription start site region 21158	974 bp upstream
Tssr21159	transcription start site region 21159	988 bp upstream
Tssr21160	transcription start site region 21160	1011 bp upstream
Tssr21161	transcription start site region 21161	1019 bp upstream
Tssr21162	transcription start site region 21162	1052 bp upstream
Tssr21163	transcription start site region 21163	1065 bp upstream
Tssr21164	transcription start site region 21164	1098 bp upstream