rs223227020 SNP Detail

Summary

• ID
  rs223227020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128061830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGTCAGA GGTCCTGAAT
  GTCTATCCAC CGTCGTCGAT TCCCTAAAAA GTACTTTCCC CATCAGCTAA CCCAGCCAAG
  TGGACTCTGA CCATCATACC AATCAATACT AGGCAGTGGG AGGCAAGAGA GACAAAGCAG
  TAGGCTGACT CTATGTATTT ACTCCAGGCA GGAGTAGTAG GCCTGGAGAG GCTGGGAAAA
  M
  CCAAGGTGCT CACTTTAAAC AATGAATTGG AAATTACTCA GACTAAGGAA AAAAAAAAAA
  GAGTGCCACA CTATTTGGAA AGGAATACAG ACGCTGAGTC ATCACTCTGC ATGGGAGGGG
  GGGCCGGCGG AGGGGGGTAG GAAACGCCAA TTAAGCGGTT GGAAGATGCG ATTCATTCAT
  TAGATTGGGC TTCAGGTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373107333	MGP_WTSI_7_135603620	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223227020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373107333	MGP_WTSI_7_135603620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128061830 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			180 bp proximal
Gm32816	predicted gene, 32816			1702 bp upstream
Rr368466	regulatory region 368466			1491 bp upstream
Rr656040	regulatory region 656040			within coordinates
Rr656041	regulatory region 656041			356 bp proximal
Rr656042	regulatory region 656042			1093 bp proximal
Rr656043	regulatory region 656043			1984 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr2414	transcription start site region 2414			1086 bp downstream
Tssr69425	transcription start site region 69425			1831 bp upstream
Tssr75109	transcription start site region 75109			380 bp upstream
Tssr75110	transcription start site region 75110			1062 bp downstream
Tssr75111	transcription start site region 75111			1207 bp downstream
Tssr75112	transcription start site region 75112			1221 bp downstream
Tssr75113	transcription start site region 75113			1283 bp downstream
Tssr75114	transcription start site region 75114			1443 bp downstream
Tssr75115	transcription start site region 75115			1473 bp downstream
Tssr75116	transcription start site region 75116			1524 bp downstream