rs223227410 SNP Detail

Summary

• ID
  rs223227410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13265556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAGGGT CCTCCCCTTT
  GTACTTTATC ATAGGAAGAG ACTGACAGCT GACTGCTTTA GAGGGAGGGA GGGGGAGGAG
  GGAGGGGAGG AGGGAGGGAG AAGGAGGAGG GAGGGGAGGA GGGAAGGAGA CTTTCAGTGG
  GCTGTGACAA CTGGTATTCC CTTCACTTCT TTTCTGCCCT GCCTCCTTGA GTGTCCTGGG
  Y
  TACTTAGATG TCCGGCCACA TTGTATCACC ACTGAAGTAG CAAGTCACCC AAGTGTGGCC
  TTGACACATA CTAGAAGAAC CTGTCCATCT CTGGCTAAGA GTTAACCTCA ACAAAAGGGT
  TGTTAGATGA TGTTAAATGT TGCTGATAAA ACTGTTGGTG AGGGCTGGTG AGATGGCTCA
  GCGGTTAAGA GCACTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505151	CHEV_8_13215556	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223227410					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13265556 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	1476 bp upstream
Rr368495	regulatory region 368495	1720 bp downstream
Rr368496	regulatory region 368496	1383 bp downstream
Rr659888	regulatory region 659888	1033 bp distal
Rr659889	regulatory region 659889	1432 bp distal
Rr659890	regulatory region 659890	915 bp proximal