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rs223231550 SNP Detail
Summary
  • ID
    rs223231550
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr6:57801556 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAACAAACCT CCAAACCCCA
    ATCCATATTT TACACACCAG ATTTTACACA TCCACTCTTT TGCCTTTGAA TGAACCCGCT
    GGAGCAGGAA GGGTGGTTCG CGTCACAGGA TGTCGCAGTT CAGTCGACCG CAGCCCCGCT
    CTAACCCTGG CTGTACCTCG GCGGTGCTTC CACCCACCAT CAAGTTTCCG CGGCTTCACA
    W
    CAGTACACCA ACCACCCAAG CTCCCCGTGG GATTTTTCTC CTCGCCTCTA AAAGCCTGCA
    CTTCATCTCC AAAGGCAGAA ATGTCCCTGT CCCTCCTACC AGCTGCGGGA GGCGCCGCCC
    CAGGCCCCGA GAGACAGGGA GCGCGTGTGG ACACGCACAA AGGTCCCTCC CGGGGACGCA
    AGCCCGAGCA AGCAGCGAGA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368438983 MGP_WTSI_6_57774565 EVA_MGPV3 EVA_MGPV3 f SNP T T T A A A A A A A A A A A A A A A A T A A T A A A A T T A T A T A A T T T A T A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223231550 SNP T T T A A A A A A A A A A A A A A A A T A A T A A A A T T A T A T A A T T T A T A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss368438983 MGP_WTSI_6_57774565 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:57801556 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17487 CpG island 17487 within coordinates
Rr399671 regulatory region 399671 1295 bp downstream
Rr631165 regulatory region 631165 1211 bp distal
Rr631166 regulatory region 631166 815 bp distal
Rr631167 regulatory region 631167 within coordinates
Rr631168 regulatory region 631168 81 bp distal
Rr631169 regulatory region 631169 555 bp proximal
Tssr56734 transcription start site region 56734 848 bp downstream
Tssr56735 transcription start site region 56735 73 bp downstream
Tssr56736 transcription start site region 56736 14 bp downstream
Tssr56737 transcription start site region 56737 74 bp upstream
Tssr61164 transcription start site region 61164 62 bp downstream
Tssr61165 transcription start site region 61165 484 bp downstream
Tssr61166 transcription start site region 61166 573 bp downstream
Tssr61167 transcription start site region 61167 711 bp downstream
Vopp1 vesicular, overexpressed in cancer, prosurvival protein 1 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory