rs223233849 SNP Detail

Summary

• ID
  rs223233849
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110560892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATATTTC AGGAAATAAC
  ATGCTCTCTG AAAATTTGAA GAAACCGGAC AGCTCTGCAT ATCTTATTTT TTTTTTTTAT
  TTAATTTTAT TTTTTACACT CTATATTCCA TTCCCCGCTA CCCCATCCAC CCTCAGTCTG
  CTCCACATCC CACATCTCCT TCCCACTCCA CCCCATCTCC ACATGGATGC CCTACCCCCC
  T
  ACCCCTACCT GACCTCTAAA CTCCCTGGGG CCTCCAGTCT CTTGAGGGTT AGGTGCATTA
  TTTCTGAATG AACATAAACC CAGAAGTCCT CTACTGTATG TGTGTTGGGG GTCTCATATC
  AGCTGTTGTA TGCTGTCTGT TTGGTGGTCC AGTGTTTGAA ACATCCCAGG GGTCCAGATT
  AATTGAGACT GCTGGTCCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	LG/J	NZB/BlNJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss355247460	MGP_WTSI_2_110570704	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	LG/J	NZB/BlNJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs223233849					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355247460	MGP_WTSI_2_110570704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110560892 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	within coordinates
Muc15	mucin 15	within coordinates
Tssr19336	transcription start site region 19336	1003 bp upstream
Tssr19337	transcription start site region 19337	1045 bp upstream
Tssr19338	transcription start site region 19338	1169 bp upstream