rs223242408 SNP Detail

Summary

• ID
  rs223242408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcattaact caaatgcaaa tgttcttaat
  ctgggcctat ttcctgaggc ctggcccaaa gtcagattcc ttctttgagt ttactttttt
  gttttggcta tcaaattcca gccAAGTGTC TAGAAGCAAG GGGGGAGGGG GCGCTCTCTA
  Y
  AATACCTTGT TTGTGTAATG TGAAAAGTCA TACCACCAAT GTGACTCGAG AGCATGGCAT
  GTCTCATTGG ACTGGAACAC TGAGTAAGTC CAGCTATGGC ATATTCCTTA TTTTTATTTG
  TTTTTCTTAA TCTAAACAAA GAATGGGCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635036	CHEV_1_10868666	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223242408					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948809 () rs orientation: forward

Symbol	Name	Function Class
Gm70429	predicted gene, 70429	1702 bp upstream
Rr11561	regulatory region 11561	1392 bp proximal
Rr29991	regulatory region 29991	9 bp distal
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	27 bp upstream
Tssr5932	transcription start site region 5932	1700 bp upstream