rs223242733 SNP Detail

Summary

• ID
  rs223242733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71249572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTTAGC ATTTTTTGAC
  CAGTGTGAGA GTGGCGAGAA GCAAGATTTT ATTCCAACCC TACTGACTAG GAGCAGAACT
  GAGCTGTGTT CTGGAGTGCT CCGAGTGACT TTGGCCTTTA AAAAAAAGTG TAAGGAGAGA
  AGGCCTGAAG TAGACAGGAG AGGTGAAAAC TCCCCAAGGG TTAGGCATTG CTTCTGCCGG
  Y
  TGAGAACTAG GAAGTTAGGC GCCTCCTTCA TCCCAGTTAC ATTTCAAAGA ATTGCTTCTA
  TAGACTCTGA AAGACCGCTG AGCTGTGGGA AATAAGCTTA AAATGAGGGG ATAGTTAGAG
  TCTTTGTTGG GCGTGGTGCT GAGCGCCTTA AATCCCTAGC AGTGGAGGGG CAGAGGCCAT
  CCTGGTCTAC ATGAGAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368722105	MGP_WTSI_6_71222582	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223242733					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368722105	MGP_WTSI_6_71222582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71249572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	270 bp distal
Krcc1	lysine-rich coiled-coil 1	within coordinates
Mir8112	microRNA 8112	787 bp downstream
Rr146429	regulatory region 146429	within coordinates
Rr379580	regulatory region 379580	22 bp downstream
Tssr56988	transcription start site region 56988	1659 bp downstream
Tssr56989	transcription start site region 56989	982 bp downstream
Tssr56990	transcription start site region 56990	845 bp downstream
Tssr61348	transcription start site region 61348	1862 bp upstream
Tssr61349	transcription start site region 61349	1840 bp upstream
Tssr61350	transcription start site region 61350	1076 bp upstream