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rs223246219 SNP Detail
Summary
  • ID
    rs223246219
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:53519426 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTTGCTAAC TGTTCCTTGT
    TGATCCCATT GGGAGATAAC AGGTGGATGT TGCTGCAGCC CAGCTGCAGA ATCTGCAAGG
    GTGGGTGGCC TTTTCTAAGC TCTGCAGCGG TCTCTCTCTC ACTGTTAAAA AAATGAGGTA
    ACATGTGTCC AGGTGACAAT CTGAATAGCC CCAAGGGTGT TTAAGGAGAT GTGTGTCTTC
    R
    GCCCACCCTA AAACCTAGTT CCTCCCCAGA AGCAACACCA ATGAATTCTT CTTGGATAGT
    GTCTCCCATG GATGGCTTTT AAAAACAGAT TGAGCCCATG TCATACCAGA TCCTGCCTCT
    TTTCTTGGAG ATCTTGGAGA CATCCGTGTT GCTGCATGGT AGTGCCTTCG TCATAACCAC
    TAGGCTGCTT CCAGTCTGGC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402792297 MGP_WTSI_19_53605485 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223246219 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss402792297 MGP_WTSI_19_53605485 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:53519426 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11064 CpG island 11064 800 bp distal
Dusp5 dual specificity phosphatase 5 Intron
Gm50394 predicted gene, 50394 1340 bp upstream
Rr370535 regulatory region 370535 1848 bp downstream
Rr549545 regulatory region 549545 1876 bp distal
Rr549546 regulatory region 549546 1937 bp distal
Rr549547 regulatory region 549547 1678 bp distal
Rr549548 regulatory region 549548 1616 bp distal
Rr549549 regulatory region 549549 850 bp distal
Rr549550 regulatory region 549550 151 bp proximal
Tssr156985 transcription start site region 156985 1890 bp downstream
Tssr156986 transcription start site region 156986 1844 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory