rs223246522 SNP Detail

Summary

• ID
  rs223246522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAACTG AGCATGCCAG
  TCATAAATCT CAGCGCAGAG TTGCTGCCAG GGCTGGGGCT GGGGCTGAGG CTGGGGCCAG
  AATATGGATA TAGCCTTTGA GGGAGACAAG AGAAACCACT TGTCATTTCC TACAAAGTTG
  AGACAGCCTC TAGTGGGCTT TCAGGTGGCT GTCCTTACCT AGATGGGATA CTCTTCTGGA
  R
  GTTCCATCTG CGATGGGCCA CTTCCATCTG CACCCATGGG GCAGGCTGAG CACAAGCATT
  TGGAGGAGGG GCTACCTCTG GATTCCTGTA CTGGATTCCT ACCATTGCTC ATGGGCACAC
  ACAGGAGTGT CTGCCTTTCT CCCTAGGAAA AGCGTCGGGC AGAGCGGGCC GAGCAGCAGC
  GTATTCGCAA TGAGCGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552057	MGP_WTSI_1_137745241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223246522					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552057	MGP_WTSI_1_137745241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776402 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	802 bp distal
Rr12645	regulatory region 12645	1999 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	924 bp downstream
Tssr226	transcription start site region 226	654 bp upstream
Tssr227	transcription start site region 227	776 bp downstream
Tssr9014	transcription start site region 9014	1934 bp downstream
Tssr9015	transcription start site region 9015	928 bp downstream
Tssr9016	transcription start site region 9016	676 bp downstream
Tssr9017	transcription start site region 9017	638 bp downstream
Tssr9018	transcription start site region 9018	620 bp downstream
Tssr9019	transcription start site region 9019	587 bp downstream
Tssr9020	transcription start site region 9020	141 bp upstream
Tssr9021	transcription start site region 9021	193 bp upstream
Tssr9022	transcription start site region 9022	679 bp upstream
Tssr9023	transcription start site region 9023	698 bp upstream
Tssr9024	transcription start site region 9024	792 bp upstream
Tssr9025	transcription start site region 9025	1081 bp upstream
Tssr9026	transcription start site region 9026	1283 bp upstream
Tssr9027	transcription start site region 9027	1393 bp upstream
Tssr9028	transcription start site region 9028	1433 bp upstream
Tssr13890	transcription start site region 13890	889 bp upstream
Tssr13891	transcription start site region 13891	644 bp upstream
Tssr13892	transcription start site region 13892	577 bp upstream
Tssr13893	transcription start site region 13893	560 bp upstream
Tssr13894	transcription start site region 13894	184 bp downstream
Tssr13895	transcription start site region 13895	194 bp downstream
Tssr13896	transcription start site region 13896	714 bp downstream
Tssr13897	transcription start site region 13897	785 bp downstream