rs223259491 SNP Detail

Summary

• ID
  rs223259491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121847520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCGACAT GGCAACTCAC
  ATCTGTCTAT AACTCAAATT TCCAGTGGAT CTGACTCCCT CACACAGACC TATGTGCAGG
  CCAAACACCA ATGCACATAA AATTAAAAAA AAAAAAAACC TTTAACATGA ACTTACCGGT
  ATTAGTATAT ATTTTACGAA TTCATTTTCA ATTTAGGAAT CAGGTACTGT TTTTTTTTTT
  K
  GGGGGGGGGT TGGTGGTTGG AGACAGGGTT TGTCTGTCTA GCCATGGCTG TCTTGGAACT
  CACTCTGTAG ACTAGGTTGG CCTAGAATTT AGAAATTCAC CTGCCTCTGC CTCCCAAGTG
  CTGGGATTAA AGGCCTGCGC CACCACTGCC GGGCTCAAGT AATGTTTTAA ACCCTAGATT
  TGTTACTTAT TTTGGCTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321668342	CHEV_5_122159466	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223259491					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121847520 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	777 bp downstream
Cpgi16531	CpG island 16531	1572 bp proximal
Gm71700	predicted gene, 71700	1131 bp downstream
Rr619651	regulatory region 619651	951 bp proximal
Rr619652	regulatory region 619652	1998 bp proximal
Tssr53053	transcription start site region 53053	1998 bp downstream