rs223260679 SNP Detail

Summary

• ID
  rs223260679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91760110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTTGAT GAGCTGGGAC
  AGAGTTCAAG TGAGTCACCT AGGTCCCCTT CCCTAACCCC AGCCCTGTGG GTCCCTGGGA
  GACTTTTTTT TTTTTTTTTT TTTTTTTTGT AAATGTTCTG CTCTTTTTCC ACGAGCTGTA
  GGGAGCACTT CCTTCATAGC CCTCAGCTCC CCTCAGTCCA TCTTTCCCCA TCTTCCCACC
  Y
  CCGACAGAGC TCCATGGCAA ACTGGGAAGG GGCTTTTATA TATTAAAAAA GAAGCTTTTA
  TTGGAAAAAA GTGAGTTTAT TTTATTCATT TCTTAATAAC AAGTATCAGG GTGGGGAGAA
  CAAAAGAGGG TATGGGGAGG CTCACTTTCC AGAATCTCTT GTCCCTCCCC ACTTTGGGCA
  CTTGGTGTGG GCGTGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821155	MGP_WTSI_2_91769922	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223260679					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821155	MGP_WTSI_2_91769922	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91760110 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1077 bp downstream
Cpgi11915	CpG island 11915	1002 bp distal
Cpgi11916	CpG island 11916	1289 bp proximal
Gm39876	predicted gene, 39876	1785 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	39 bp downstream
Rr560806	regulatory region 560806	1731 bp distal
Rr560807	regulatory region 560807	1336 bp distal
Rr560808	regulatory region 560808	361 bp distal
Rr560809	regulatory region 560809	441 bp proximal
Rr560810	regulatory region 560810	1913 bp proximal
Tssr18929	transcription start site region 18929	89 bp downstream
Tssr25211	transcription start site region 25211	103 bp downstream
Tssr25212	transcription start site region 25212	127 bp downstream
Tssr25213	transcription start site region 25213	1154 bp downstream
Tssr25214	transcription start site region 25214	1686 bp downstream
Tssr25215	transcription start site region 25215	1896 bp downstream
Tssr25216	transcription start site region 25216	1910 bp downstream
Tssr25217	transcription start site region 25217	1931 bp downstream
Tssr25218	transcription start site region 25218	1963 bp downstream