rs223274556 SNP Detail

Summary

• ID
  rs223274556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGATAG GGGGAAAGTA
  AGAGACATCA CAAAGTCCCT AGCTGTGCTG TGGAACTGGG AAAGGAAACT GGGTATCAAT
  AAAACATTGA CGTCCAATAG AAAGAGCAGT GTTTGTCTGT CTGTCTGTCT GTCTGTTTGT
  TTGTTTGTTT GTTTTTAAAG AAAGAAAAGA AAAGGGGAGG GGAGGGGAAG GGAGGGGAGA
  R
  AAAATTCTGG GGGAGTTGAA ATTTCGTTAT CAAGATTCAC TTTGCTGATC AGCCTAAATC
  CTCTGCGAAG CATGGTGATG CGATAGTATT CCCATTTCAC ATACCCTCCA GTACAACTAT
  GTGTCACGTC TCAGGCAAAG ATCCACTGAA ATGTTGTTCC TCTCAATGAC ATTTTCCTGC
  CAAAACTTAA GGAAACTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351910648	MGP_WTSI_1_152841342	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223274556					SNP	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351910648	MGP_WTSI_1_152841342	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	419 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	777 bp upstream
Rr420192	regulatory region 420192	1573 bp distal
Rr420193	regulatory region 420193	671 bp distal
Rr420194	regulatory region 420194	332 bp distal
Rr420195	regulatory region 420195	218 bp distal
Rr420196	regulatory region 420196	291 bp proximal
Tssr14167	transcription start site region 14167	1057 bp upstream
Tssr14168	transcription start site region 14168	763 bp upstream