rs223296180 SNP Detail

Summary

• ID
  rs223296180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106148877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAACTC CCCATGTAGA
  CCAGGCTGGA CTCAGTCTCA GAATTCGCCT GCCTCCCAGG TGCTGGGATA AAAGCATGAG
  CCTCCACACC CAGTATGGTT TTTATCCCTT TTTAATGCTT CTCTATGTGA TTTCATCCCT
  CCTGGGTCTG AAATGAAGCA GGAGAGTGGA TGCTGTTGTC TGTCTTCTGT TGTCTTGCCT
  Y
  TGTCTTATTT TTGTTTATTT AATGGATTTG TTAAAATAGA ATCTCATTGT ATAGCCCAGA
  CTGGTCTGAC ACTCTCCAGC TCCCAGCCTC AGCCTCATTA GGGTTGGAAT TACGAGCCTG
  TGTCATCATG CCTACCTATT AGACTAACTG TTTTTCCTAA TTTTTGGGTT TTTTTTTTTT
  TGTTTTGTTT TTTCCTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384584814	MGP_WTSI_11_106119365	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223296180					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384584814	MGP_WTSI_11_106119365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106148877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	1671 bp distal
D11Mit127	DNA segment, Chr 11, Massachusetts Institute of Technology 127	1320 bp proximal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	1972 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	1791 bp downstream
Tssr105507	transcription start site region 105507	1916 bp downstream
Tssr105508	transcription start site region 105508	1879 bp downstream
Tssr105509	transcription start site region 105509	1862 bp downstream
Tssr111307	transcription start site region 111307	1948 bp upstream