rs223307592 SNP Detail

Summary

• ID
  rs223307592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35962576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGCTTGT TGCCCCAGCG AACAGTTGAG
  CAGGGAGCAG AAGGTCTGCG GATTTTCCAC GGAAGGTGCG TCTCCAAGCC CAGGCATCTC
  CTACAAAGGG GTCCTGTGGT ATTTATTTAC TTATGTATTT GTAAAGTTGC ATGGAAAAAA
  R
  GTGAAGCTTG ACGCGTGGGG GAGCTCAGCC TGGGAGGACC TCGCCAGGAC GCGGGGATCT
  TGAGGCGCAA CGGCTGCGAC TCCAGCTTCA GAGCCTGCGG CGTCCAAGTG GCCAAAGCTG
  ATCTGGGAGG GAGGCCGCGG AGGAGGGAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584010	CHEV_18_35989177	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223307592					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35962576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	1775 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	866 bp downstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Tssr150566	transcription start site region 150566	708 bp downstream
Tssr150567	transcription start site region 150567	655 bp downstream
Tssr150568	transcription start site region 150568	207 bp upstream
Tssr150569	transcription start site region 150569	256 bp upstream
Tssr150570	transcription start site region 150570	275 bp upstream
Tssr150571	transcription start site region 150571	305 bp upstream
Tssr150572	transcription start site region 150572	317 bp upstream
Tssr150573	transcription start site region 150573	568 bp upstream
Tssr150574	transcription start site region 150574	656 bp upstream
Tssr150575	transcription start site region 150575	777 bp upstream
Tssr150576	transcription start site region 150576	1448 bp upstream
Tssr152918	transcription start site region 152918	602 bp downstream