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rs223308950 SNP Detail
Summary
  • ID
    rs223308950
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr9:112063204 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTGGGACCC AGGACCTCTG
TGGTAACTGA GGAAAGTGAC AAGTTTTCAA CTGAAACAAG AGAATGTCCA AACTTGGCAC
CATAAAACCC ATATAAAATT ACTGGAAACT TCTGTTACAG AAAGCATCGT CCCTTTCAAT
TCCCTTCCCA GATTTCAATT TCTGCCTGCT TTGAGGGAAA GAGAGTCCAC CCATGCCTTC
S
GCCGAGACAT AGAAACAAGA TAAACAACAC AGAAACGACA AACAGGTCAA AGGGAAAGCA
CAGATAGATG GTAGAAAGAA AAAAAAAGGG GGAGGGGGCA GCAGAAGCAG AAAGCCCCAA
CAGCCAGACA CAAAGGGCTT GTGATGCTCA TGTCGGAAGA CTTGGCTCTT TACCTGAAGG
AACAGTGGAG TGACCCAGCG                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378948977 MGP_WTSI_9_112136640 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223308950 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss378948977 MGP_WTSI_9_112136640 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:112063204 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
2900079G21Rik RIKEN cDNA 2900079G21 gene 141 bp upstream
Arpp21 cyclic AMP-regulated phosphoprotein, 21 within coordinates
Cpgi22409 CpG island 22409 209 bp proximal
Gm68368 predicted gene, 68368 889 bp downstream
Rr687419 regulatory region 687419 1646 bp distal
Rr687420 regulatory region 687420 1145 bp distal
Rr687421 regulatory region 687421 within coordinates
Rr687422 regulatory region 687422 198 bp proximal
Rr687423 regulatory region 687423 872 bp proximal
Tssr87517 transcription start site region 87517 97 bp upstream
Tssr87518 transcription start site region 87518 121 bp upstream
Tssr91795 transcription start site region 91795 1750 bp upstream
Tssr91796 transcription start site region 91796 1714 bp upstream
Tssr91797 transcription start site region 91797 1676 bp upstream
Tssr91798 transcription start site region 91798 1008 bp upstream
Tssr91799 transcription start site region 91799 882 bp upstream
Tssr91800 transcription start site region 91800 867 bp upstream
Tssr91801 transcription start site region 91801 850 bp upstream
Tssr91802 transcription start site region 91802 813 bp upstream
Tssr91803 transcription start site region 91803 724 bp upstream
Tssr91804 transcription start site region 91804 566 bp upstream
Tssr91805 transcription start site region 91805 455 bp downstream
Tssr91806 transcription start site region 91806 491 bp downstream
Tssr91807 transcription start site region 91807 672 bp downstream
Tssr91808 transcription start site region 91808 694 bp downstream
Tssr91809 transcription start site region 91809 748 bp downstream
Tssr91810 transcription start site region 91810 820 bp downstream
Tssr91811 transcription start site region 91811 1006 bp downstream
Tssr91812 transcription start site region 91812 1316 bp downstream
Tssr91813 transcription start site region 91813 1375 bp downstream
Tssr91814 transcription start site region 91814 1694 bp downstream
Tssr91815 transcription start site region 91815 1718 bp downstream
Tssr91816 transcription start site region 91816 1753 bp downstream
Tssr91817 transcription start site region 91817 1764 bp downstream
Tssr91818 transcription start site region 91818 1783 bp downstream
Tssr91819 transcription start site region 91819 1804 bp downstream
Tssr91820 transcription start site region 91820 1830 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory