rs223317892 SNP Detail

Summary

• ID
  rs223317892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8556615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCCTCC TCGCTCGCTG
  CGGCCGCCGC TGCCGCCGCC GCCGCCGCCG CCGCAGGGCC CGCCTCCCGC CGCCGGGGCC
  GGGGCTGCGG GGCCGCGGGC CGGCCGGGGG CGGAGGGCGG CCGGGCGGGG GCCGCGTAGT
  CAGCCCCGCC TCGGACCGGG CGCGGAAGGC TGGAGGCCGG GCGGGCCGCG GCGAGCCTGC
  R
  GGCCCGGGTG TGGGCTGCGG CGGCGACCGC TGAGGCTGCG CGGGCGGGTG ACCGGCTGGC
  CGCGCTCGGG GCGCTGAGGC CTCCGCCTCC TCGGCGTCGT CGTCGGGGCT CCGGCAGCGG
  ACGCGGCGCC CGGCGGCTCG GCTCGGCTCA GCTCGCTCTC AAAATGGCGG CGGCGTGAAA
  TGTCACATCC GCATGGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss395341340	MGP_WTSI_16_8738844	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs223317892					SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395341340	MGP_WTSI_16_8738844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8556615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	within coordinates
Gm59849	predicted gene, 59849	within coordinates
Rr511320	regulatory region 511320	1253 bp distal
Rr511321	regulatory region 511321	420 bp distal
Rr511322	regulatory region 511322	1130 bp distal
Rr511323	regulatory region 511323	within coordinates
Tssr139876	transcription start site region 139876	1010 bp upstream
Tssr139877	transcription start site region 139877	133 bp downstream
Tssr139878	transcription start site region 139878	148 bp downstream
Tssr139879	transcription start site region 139879	210 bp downstream
Usp7	ubiquitin specific peptidase 7	within coordinates