rs223325611 SNP Detail

Summary

• ID
  rs223325611
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGGGGG GGGGGGGGGG
  C
  GGGGGGGCCC AGTCTTCAGA GTCAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	RIIIS/J	SPRET/EiJ	SWR/J
ss915695916	MGP_WTSI_2_132512655	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	RIIIS/J	SPRET/EiJ	SWR/J
rs223325611					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915695916	MGP_WTSI_2_132512655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354575 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm10757	predicted gene 10757	1910 bp upstream
Gm74612	predicted gene, 74612	151 bp upstream
Rr367319	regulatory region 367319	within coordinates
Rr367320	regulatory region 367320	1349 bp upstream
Rr565480	regulatory region 565480	162 bp distal
Rr565481	regulatory region 565481	within coordinates
Rr565482	regulatory region 565482	432 bp proximal
Tssr26474	transcription start site region 26474	146 bp upstream
Tssr26475	transcription start site region 26475	1247 bp downstream