rs223328481 SNP Detail

Summary

• ID
  rs223328481
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26491893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCCTTT CTCTTTGGAA
  ATCTCACGCT GAAAACAATT CAAACATGTT ATGGAAACAA GCCAAAGGTC CCTGGGATTT
  TTCCTTAGCT ACACCTGTAC CTGTGCATTC CTAAGATGTT CCATGCACTC TCCTGGGGAC
  AGTGCCACAG CAGGGGTTGT GATACTTCTC TGGACGGTGG GATCTGCTTA GTGGGCTGCA
  K
  TCTTCATAGT CTTAAGGATA TGTTTCACTG AATCATCACT CAGAGAGTGC ACTAGTGATC
  AAAGTATTGC ATTGTGATGA TTCGTCTTGG TGTCAGCTGG GCCTCACTTA AGCGTCACCT
  AGGAGACACA CCTCTGAGTG TCCTATAGAA GTCTAAAGGA GTCCCTTCTT GCTGACTCAC
  TGAATACATG CATCTCTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360767	MGP_WTSI_12_27126759	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223328481					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360767	MGP_WTSI_12_27126759	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26491893 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	781 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	852 bp downstream
Tssr112998	transcription start site region 112998	1847 bp upstream
Tssr112999	transcription start site region 112999	1894 bp upstream
Tssr115902	transcription start site region 115902	963 bp downstream
Tssr115903	transcription start site region 115903	1295 bp downstream
Tssr115904	transcription start site region 115904	1312 bp downstream
Tssr115905	transcription start site region 115905	1617 bp downstream
Tssr115906	transcription start site region 115906	1745 bp downstream
Tssr115907	transcription start site region 115907	1800 bp downstream
Tssr115908	transcription start site region 115908	1840 bp downstream
Tssr115909	transcription start site region 115909	1926 bp downstream
Tssr115910	transcription start site region 115910	1978 bp downstream