rs223329255 SNP Detail

Summary

• ID
  rs223329255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAGTA GTTCATGTTA
  GTGGCTTTTT AAAAAGTGTG TTACTGTTTT CCGCTTATCC AGCTAGCTCC CAAAGAAGTG
  AGACTGGACT ATTGCAATTT ATTAAACTTT AAGGGCAGAA CAACTGAGCA GTATTACTCT
  ATTTTAATCC TCTAAGCTAC TCTGGCTACT TCCTAGCCCA CATCCCTGAG ATGCTCGAAT
  Y
  TTATGGCTTT CTCTGCTCCA GCTGTTTTCT TGTGGTCTCT CCTGGATTCT TTCCCTGTGA
  CTAATTCTCA TTTTTTTCTC TCTCCTGCCC CATTTCCTGG AAGGAAGTCC TGCCCTATCC
  TCTCCCCTGA CCAGTTATTC ATCAGATTTT ATTGACAAAT CGGGGAATAA TTCAGGAGCA
  ATGTTTTTAC AACATTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362697	CHEV_17_32794137	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223329255					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876166 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1708 bp upstream
Gm65897	predicted gene, 65897	236 bp downstream
Tssr143725	transcription start site region 143725	1686 bp upstream
Tssr143726	transcription start site region 143726	1774 bp upstream
Tssr143727	transcription start site region 143727	1797 bp upstream
Tssr143728	transcription start site region 143728	1817 bp upstream
Tssr143729	transcription start site region 143729	1829 bp upstream
Tssr143730	transcription start site region 143730	1852 bp upstream
Tssr143731	transcription start site region 143731	1874 bp upstream
Tssr143732	transcription start site region 143732	1888 bp upstream