rs223329321 SNP Detail

Summary

• ID
  rs223329321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48046828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGAGGC TTCCGGCAGT
  CATGCGGGAG CTCATGAGCA TTGGTCCCTT GATTTCCAAG AACGTTCTTG GAGCTGGCCT
  TTTGTTTATG TGCCCGGCTT CTCCCGAGGG AAGAGCCGCG GGGACTGTGG TCAATAGTGC
  TCTGGAGCTG CTTATCCTAG GGCCTGGGAG GGCTGGGAGA GAGGTTACAG GGTTCGGTTC
  R
  GCCATTCCTC CGCTGTTCCA ATTCTGGAGC TCCTTTGCCA ACAATCGGGA AATGTTTCTT
  ATAGAACCAA GTTGGAGAAA GAAAAGCTGC CCAACGCGCA TACTGAACAC AATGAATGAA
  ATTACTTTAT TGGAGTTGTT TTAACCCAGC AAGATACACA TAACGCCAAA GACTGCCGGG
  GGTGGGGGTG GCACCACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430091	MGP_WTSI_4_48059700	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223329321					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430091	MGP_WTSI_4_48059700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48046828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14278	CpG island 14278	100 bp distal
Cpgi14279	CpG island 14279	459 bp proximal
Gm68858	predicted gene, 68858	104 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	1611 bp downstream
Rr591927	regulatory region 591927	1665 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	1282 bp distal
Rr591930	regulatory region 591930	360 bp proximal
Rr591931	regulatory region 591931	1197 bp proximal
Rr591932	regulatory region 591932	1861 bp proximal
Tssr37187	transcription start site region 37187	1704 bp downstream
Tssr37188	transcription start site region 37188	1668 bp downstream
Tssr37189	transcription start site region 37189	1638 bp downstream
Tssr37190	transcription start site region 37190	1590 bp downstream
Tssr37191	transcription start site region 37191	1521 bp downstream
Tssr37192	transcription start site region 37192	1495 bp downstream
Tssr37193	transcription start site region 37193	1439 bp downstream
Tssr37194	transcription start site region 37194	853 bp downstream
Tssr37195	transcription start site region 37195	412 bp upstream
Tssr37196	transcription start site region 37196	438 bp upstream
Tssr37197	transcription start site region 37197	474 bp upstream
Tssr37198	transcription start site region 37198	496 bp upstream
Tssr37199	transcription start site region 37199	511 bp upstream
Tssr37200	transcription start site region 37200	556 bp upstream
Tssr37201	transcription start site region 37201	910 bp upstream
Tssr37202	transcription start site region 37202	1036 bp upstream
Tssr37203	transcription start site region 37203	1073 bp upstream
Tssr37204	transcription start site region 37204	1239 bp upstream
Tssr37205	transcription start site region 37205	1284 bp upstream
Tssr37206	transcription start site region 37206	1447 bp upstream
Tssr41631	transcription start site region 41631	1924 bp upstream
Tssr41632	transcription start site region 41632	1847 bp upstream
Tssr41633	transcription start site region 41633	107 bp downstream
Tssr41634	transcription start site region 41634	307 bp downstream