rs223334339 SNP Detail

Summary

• ID
  rs223334339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56809527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAAATG TCACCCTTAC
  TCCATGGAAC CTGTTCTCAA TCAAACACCT TAAGTTTCTA TTGTTTTAAA TTAGAAAAGG
  CCTTCAAAAA AACTAAACAC AGTCCCTGTG TCTTCTGGTA GCCTTCCAAA GTCATACTTA
  CCTATTACCC TGTACAAAGG AGAAGGAAGG CCTTGGTGCA ACAGTACAAG ATTATGGCCT
  K
  CCCAAAATCT GCACATGGGA ACATGGGAAG ACCAAAAAGG AACCATAAAA GAAGTAGGCC
  AATCATTACT GTTGTTTCAT TTGTGTAACC ATTAATTAAC GAAGAGCTAA AAAGTAGCTG
  CACACGGTGG ACTTGATACA CAAGACGCAT CCGTTTCAGT ATCACTTGTC TCTGGGTCCT
  TAATCTCCTT CACAATTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859381	CHEV_19_56895585	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223334339					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56809527 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	811 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	542 bp proximal
Rr406045	regulatory region 406045	1022 bp upstream
Rr550140	regulatory region 550140	321 bp proximal
Rr550141	regulatory region 550141	822 bp proximal
Rr550142	regulatory region 550142	1085 bp proximal
Tssr157215	transcription start site region 157215	833 bp upstream
Tssr159886	transcription start site region 159886	985 bp downstream
Tssr159887	transcription start site region 159887	1066 bp downstream