rs223337382 SNP Detail

Summary

• ID
  rs223337382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106862831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACCAAGT GATCTACCGC
  TAAACCTGAG CCCACCTCGA CCCTATTTCT GACGTGTCCT CTGCTAGCGG GGGGAGTGGG
  AGGGAGAGGA AGGGGCCTCG GGGGGATGGA TCCCTTAGCC GCTATTGTCA ACTTCCTCGG
  CAGGAGTGGA TGTCTGTAAA GGTTGGAAGG TAAGGTGGCT CTGGGAATGG CCTAGCACGC
  K
  TCCACGCGGT AGTCGCTCAA AAGTTTCAAA CAAGACCTTG TCCTACTGGC CGTGCCACTG
  GGTCGCGTCG CTCCAGGTCT CCCCTCCTCC CCTCCCCCTC GAAGTAGTGT CCCTGCCACT
  CCGCAGTTCC ACCACCCACG CGGGCCCCCA CGCTCACCTG TTGCAGCACT TTGTCCAGGG
  ACTCCGCCCG CGCTAGGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375925157	MGP_WTSI_8_108660099	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223337382					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375925157	MGP_WTSI_8_108660099	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106862831 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Esrp2	epithelial splicing regulatory protein 2	Intron
Rr669096	regulatory region 669096	629 bp distal
Rr669097	regulatory region 669097	572 bp proximal
Rr669098	regulatory region 669098	765 bp proximal
Tssr79219	transcription start site region 79219	768 bp downstream
Tssr79220	transcription start site region 79220	742 bp downstream
Tssr79221	transcription start site region 79221	719 bp downstream
Tssr79222	transcription start site region 79222	687 bp downstream
Tssr79223	transcription start site region 79223	629 bp downstream
Tssr79224	transcription start site region 79224	310 bp downstream
Tssr79225	transcription start site region 79225	246 bp downstream
Tssr79226	transcription start site region 79226	859 bp upstream
Tssr82755	transcription start site region 82755	1256 bp upstream
Tssr82756	transcription start site region 82756	1239 bp upstream
Tssr82757	transcription start site region 82757	593 bp downstream
Tssr82758	transcription start site region 82758	691 bp downstream
Tssr82759	transcription start site region 82759	1169 bp downstream