rs223342897 SNP Detail

Summary

• ID
  rs223342897
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:102119787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATACCCA AACTAAATTC
  CTTTAGAGTC GTGATAGTAG AAAAATGTGA ATGGCTTAGT GTTAACCTTT GTAACTGTCA
  CTGTCTTTAC TGAGGTGTGA CTCTTTTAGA GTCCAGATGA AGATGCTCAC ACCTACAAGG
  AAGCCAATCT AAGTTTATAG TTCATCGGAG TAATCACAGT TATAAACGAA GCCTGAAAAA
  W
  CTTCAACCTA CTGTGTTCTG TTGTCCTGAC CGGGGAGACT ATGGAATGCT TTGTTTGAAT
  TTATATCTAC TTGTCAAAGT ATAGCAGAGA GAAAGAAAGG TTGTGGGTTT GTGGCAAGTG
  TAGATTTATC ATCAAAACGT ACAGACCGAC TGGTGTAAGG TCAACTCCTC CTTTATATGT
  GACCTATTCC TGGTGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss392267736	MGP_WTSI_14_102281568	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	A	T	T	T	T	A	T	A	A	A	T	A	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs223342897					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	A	T	T	T	T	A	T	A	A	A	T	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392267736	MGP_WTSI_14_102281568	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:102119787 () rs orientation: forward

Symbol	Name	Function Class
Lmo7	LIM domain only 7	within coordinates
Rr296718	regulatory region 296718	1213 bp proximal
Tssr126927	transcription start site region 126927	1687 bp upstream
Tssr126928	transcription start site region 126928	1695 bp upstream
Tssr126929	transcription start site region 126929	1776 bp upstream
Tssr126930	transcription start site region 126930	1963 bp upstream