rs223343325 SNP Detail

Summary

• ID
  rs223343325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148490011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA TGTGTTTTAA TCATTGCAAG
  Y
  TCTCCACATC CTGCAATCTC AAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321718357	CHEV_5_149364777	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223343325					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148490011 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	16 bp downstream
Cpgi17075	CpG island 17075	1576 bp distal
Cpgi17076	CpG island 17076	54 bp distal
Gm72666	predicted gene, 72666	640 bp upstream
Gm72684	predicted gene, 72684	within coordinates
Rr378792	regulatory region 378792	within coordinates
Rr625194	regulatory region 625194	550 bp distal
Rr625195	regulatory region 625195	within coordinates
Rr625196	regulatory region 625196	384 bp distal
Rr625197	regulatory region 625197	150 bp proximal
Rr625198	regulatory region 625198	714 bp proximal
Rr625199	regulatory region 625199	993 bp proximal
Tssr49862	transcription start site region 49862	808 bp downstream
Tssr54570	transcription start site region 54570	1520 bp upstream
Tssr54571	transcription start site region 54571	1078 bp upstream
Tssr54572	transcription start site region 54572	980 bp upstream
Tssr54573	transcription start site region 54573	928 bp upstream
Tssr54574	transcription start site region 54574	773 bp upstream
Tssr54575	transcription start site region 54575	684 bp upstream
Tssr54576	transcription start site region 54576	513 bp upstream
Tssr54577	transcription start site region 54577	358 bp upstream
Tssr54578	transcription start site region 54578	655 bp downstream
Tssr54579	transcription start site region 54579	792 bp downstream
Ubl3	ubiquitin-like 3	412 bp upstream