rs223345420 SNP Detail

Summary

• ID
  rs223345420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGAAGCG GCGCCGAGAC
  CCTAACGCCC CGGACAGGCC CTCGCTCTCC GGAAACGCAG CTCCGTCAGG CGCTCGGTAG
  CTACAGTCCT CGTGGGTAGG GAGGGAGCCG CAAGGCCGCC GCAGAGCACC CGAACCTGAC
  GGACGCCTGA GCAGCAACTA AGCGAGCGGG CGGGCCCCAG CGCGCATTTA TACCCACCCT
  Y
  ACAAAATGGC GCCCGCGCCA CCCGGAAATG AATCTCCTGA TTGGCCCATT CGGCCGTGTT
  GCGTAACGTC GCCGCCGCGC GCCCCGCCCC TCCCAGGTGC GCCTGCGCAC CGCGCGGCGG
  GCGGGCGGAA AGCGCGCAGT CACTGCGGTG GGGCGGGGGA GCAGCCAGAG AAGGCAGTTA
  GAAAGCCCGC CAAATGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861318	MGP_WTSI_11_116714446	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223345420					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861318	MGP_WTSI_11_116714446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	within coordinates
Rr403147	regulatory region 403147	414 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	38 bp upstream
Tssr106000	transcription start site region 106000	912 bp downstream
Tssr106001	transcription start site region 106001	558 bp downstream
Tssr106002	transcription start site region 106002	122 bp upstream
Tssr106003	transcription start site region 106003	325 bp upstream
Tssr106004	transcription start site region 106004	620 bp upstream
Tssr112001	transcription start site region 112001	1938 bp upstream
Tssr112002	transcription start site region 112002	1861 bp upstream
Tssr112003	transcription start site region 112003	1817 bp upstream
Tssr112004	transcription start site region 112004	1657 bp upstream
Tssr112005	transcription start site region 112005	979 bp upstream
Tssr112006	transcription start site region 112006	940 bp upstream
Tssr112007	transcription start site region 112007	874 bp upstream
Tssr112008	transcription start site region 112008	768 bp upstream
Tssr112009	transcription start site region 112009	676 bp upstream
Tssr112010	transcription start site region 112010	33 bp upstream