About   Help   FAQ
rs223345420 SNP Detail
Summary
  • ID
    rs223345420
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:116743958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGCGAAGCG GCGCCGAGAC
    CCTAACGCCC CGGACAGGCC CTCGCTCTCC GGAAACGCAG CTCCGTCAGG CGCTCGGTAG
    CTACAGTCCT CGTGGGTAGG GAGGGAGCCG CAAGGCCGCC GCAGAGCACC CGAACCTGAC
    GGACGCCTGA GCAGCAACTA AGCGAGCGGG CGGGCCCCAG CGCGCATTTA TACCCACCCT
    Y
    ACAAAATGGC GCCCGCGCCA CCCGGAAATG AATCTCCTGA TTGGCCCATT CGGCCGTGTT
    GCGTAACGTC GCCGCCGCGC GCCCCGCCCC TCCCAGGTGC GCCTGCGCAC CGCGCGGCGG
    GCGGGCGGAA AGCGCGCAGT CACTGCGGTG GGGCGGGGGA GCAGCCAGAG AAGGCAGTTA
    GAAAGCCCGC CAAATGCTCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384861318 MGP_WTSI_11_116714446 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223345420 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384861318 MGP_WTSI_11_116714446 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116743958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 within coordinates
Mfsd11 major facilitator superfamily domain containing 11 within coordinates
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 within coordinates
Rr403147 regulatory region 403147 414 bp upstream
Srsf2 serine and arginine-rich splicing factor 2 38 bp upstream
Tssr106000 transcription start site region 106000 912 bp downstream
Tssr106001 transcription start site region 106001 558 bp downstream
Tssr106002 transcription start site region 106002 122 bp upstream
Tssr106003 transcription start site region 106003 325 bp upstream
Tssr106004 transcription start site region 106004 620 bp upstream
Tssr112001 transcription start site region 112001 1938 bp upstream
Tssr112002 transcription start site region 112002 1861 bp upstream
Tssr112003 transcription start site region 112003 1817 bp upstream
Tssr112004 transcription start site region 112004 1657 bp upstream
Tssr112005 transcription start site region 112005 979 bp upstream
Tssr112006 transcription start site region 112006 940 bp upstream
Tssr112007 transcription start site region 112007 874 bp upstream
Tssr112008 transcription start site region 112008 768 bp upstream
Tssr112009 transcription start site region 112009 676 bp upstream
Tssr112010 transcription start site region 112010 33 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory