rs223348538 SNP Detail

Summary

• ID
  rs223348538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28044089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTACAG GAGCTATTCA
  GAGGCTAGTG ATGTTTGAAA GTCAGTCTGC ACACAGTGTG TGTGTGTGTG TATGTGTGTA
  TACATTATGA GTACAGGTAT TTGCAGAGTT CATAAGCAAC TATTACAGGC AATTCTTAAC
  TACCTGACAT GGGCCCTGGG GACTGCCCTC TGGTCCTCTG CCTGAATAGA GGAAGTTAGA
  R
  CTCACAGGAT ATGGGGCTGC TTCAGATTGC CCACAGCCAC TGGCTACTGA CTAGGATTTG
  CTTCATGCAG GGGGTGTGGT TTTGTCAGCT GAAGAGAGTT TTTTTGCGAT TGTGTGACAT
  TTGGAATTCT GGAGACTTTT GAGAGCATAT ATAAATGCTA GGGCCCCAGA AGCAGGGTTG
  TTGTTGTTGG TGTGTTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349850	CHEV_17_27962060	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223348538					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28044089 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	1106 bp downstream
Rr405125	regulatory region 405125	1087 bp upstream
Rr524320	regulatory region 524320	within coordinates
Rr524321	regulatory region 524321	274 bp proximal
Rr524322	regulatory region 524322	1294 bp proximal
Tssr143360	transcription start site region 143360	114 bp upstream
Tssr143361	transcription start site region 143361	164 bp upstream
Tssr147072	transcription start site region 147072	922 bp downstream
Tssr147073	transcription start site region 147073	1809 bp downstream