rs223358458 SNP Detail

Summary

• ID
  rs223358458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAAAGT AAACCCCACA
  GTAGACTTAC TGATTCCTGG AAGGACTCCT TTGTTGTACT TTGGGATATC GCCACCACAG
  GCCGAATTGC CCTCCGGTGT GTGATTACGG TGTCATCAGT ACACACACTT GGGTGGAGCT
  TTGGAATTAG GAAGAACATG AAAGAAATAT GGGAAGAAAT GCTGCCTTTT GTAGGTATGG
  K
  TGACTTGGAA GTTTCAGTCT TCTCTTCACT CTTGCCCAGG CAGACCATGC CTGTCTTTTT
  GTTTGTTTGT TTGTTTGTTT TTGAGACAGG GTTTCTCTGT AGCCCTGGCT GTCCCTGAAC
  TCACTTTGTA GACCAGGCTG GCCTTGAACT CAAATCTACC TGCCTCTGCC TCCCAAGTGC
  TGGGATTAAA GGCGTGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364407803	MGP_WTSI_5_30063936	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223358458					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364407803	MGP_WTSI_5_30063936	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	740 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	1460 bp upstream
Gm72214	predicted gene, 72214	564 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	964 bp distal
Rr608878	regulatory region 608878	1607 bp distal
Rr608879	regulatory region 608879	725 bp distal
Rr608880	regulatory region 608880	622 bp distal
Rr608881	regulatory region 608881	149 bp distal
Rr608882	regulatory region 608882	768 bp proximal
Tssr45546	transcription start site region 45546	1659 bp downstream
Tssr45547	transcription start site region 45547	1645 bp downstream
Tssr45548	transcription start site region 45548	1565 bp downstream
Tssr45549	transcription start site region 45549	1546 bp downstream
Tssr45550	transcription start site region 45550	1407 bp downstream
Tssr45551	transcription start site region 45551	1385 bp downstream
Tssr45552	transcription start site region 45552	1256 bp downstream
Tssr45553	transcription start site region 45553	936 bp downstream
Tssr50466	transcription start site region 50466	1503 bp upstream
Tssr50467	transcription start site region 50467	1471 bp upstream
Tssr50468	transcription start site region 50468	1451 bp upstream
Tssr50469	transcription start site region 50469	968 bp upstream